IL_7WTZ_059

3D structure

PDB id

7WTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WTZ_059 not in the Motif Atlas

Geometric match to IL_4LFB_034

Geometric discrepancy: 0.0906

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7WTZ|1|2|G|1168
7WTZ|1|2|G|1169
7WTZ|1|2|A|1170
7WTZ|1|2|G|1171
7WTZ|1|2|U|1172
7WTZ|1|2|A|1173
7WTZ|1|2|U|1174
7WTZ|1|2|G|1175
*
7WTZ|1|2|U|1186
7WTZ|1|2|G|1187
7WTZ|1|2|A|1188
7WTZ|1|2|A|1189
7WTZ|1|2|A|1190
7WTZ|1|2|C|1191

Current chains

Chain 2

18S rRNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain t

Protein LTV1 homolog