IL_7WU0_008

3D structure

PDB id

7WU0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUU*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WU0_008 not in the Motif Atlas

Geometric match to IL_1ZX7_006

Geometric discrepancy: 0.1685

The information below is about IL_1ZX7_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

7WU0|1|2|G|108
7WU0|1|2|U|109
7WU0|1|2|U|110
*
7WU0|1|2|G|351
7WU0|1|2|U|352
7WU0|1|2|C|353

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain I

40S ribosomal protein S8

Chain L

40S ribosomal protein S11