IL_7WU0_035

3D structure

PDB id

7WU0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

7WU0|1|2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WU0_035 not in the Motif Atlas

Geometric match to IL_4V88_407

Geometric discrepancy: 0.2281

The information below is about IL_4V88_407

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7WU0|1|2|G|606
7WU0|1|2|U|607
7WU0|1|2|C|608
*
7WU0|1|2|G|635
7WU0|1|2|C|636

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain e

40S ribosomal protein S30

Chain v

Serine/threonine-protein kinase RIO2