IL_7WU0_047

3D structure

PDB id

7WU0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WU0_047 not in the Motif Atlas

Geometric match to IL_6N5P_003

Geometric discrepancy: 0.0905

The information below is about IL_6N5P_003

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.1

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

32

Unit IDs

7WU0|1|2|A|922
7WU0|1|2|G|923
*
7WU0|1|2|C|1019
7WU0|1|2|A|1020
7WU0|1|2|U|1021
7WU0|1|2|U|1022

Current chains

Chain 2

18S rRNA

Nearby chains

Chain N

40S ribosomal protein S13

Chain W

40S ribosomal protein S15a

Chain b

40S ribosomal protein S27