IL_7WU0_054

3D structure

PDB id

7WU0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WU0_054 not in the Motif Atlas

Geometric match to IL_5J7L_037

Geometric discrepancy: 0.1048

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

7WU0|1|2|C|1047
7WU0|1|2|G|1048
7WU0|1|2|A|1049
7WU0|1|2|A|1050
7WU0|1|2|G|1051
*
7WU0|1|2|C|1067
7WU0|1|2|G|1068
7WU0|1|2|U|1069
7WU0|1|2|A|1070
7WU0|1|2|G|1071

Current chains

Chain 2

18S rRNA

Nearby chains

Chain O

40S ribosomal protein S14

Chain t

Protein LTV1 homolog