IL_7WU0_085

3D structure

PDB id

7WU0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7WU0_085 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.197

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7WU0|1|2|C|1717
7WU0|1|2|G|1718
7WU0|1|2|A|1719
7WU0|1|2|U|1720
*
7WU0|1|2|A|1813
7WU0|1|2|G|1814
7WU0|1|2|A|1815
7WU0|1|2|G|1816

Current chains

Chain 2

18S rRNA

Nearby chains

Chain t

Protein LTV1 homolog

Chain u

Pre-rRNA-processing protein TSR1 homolog