IL_7XAM_021

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAGC*GUGAUAGC

Length

13 nucleotides

Bulged bases

7XAM|1|A|G|916, 7XAM|1|A|G|920

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XAM_021 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1327

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7XAM|1|A|G|789
7XAM|1|A|A|790
7XAM|1|A|A|791
7XAM|1|A|G|792
7XAM|1|A|C|793
*
7XAM|1|A|G|914
7XAM|1|A|U|915
7XAM|1|A|G|916
7XAM|1|A|A|917
7XAM|1|A|U|918
7XAM|1|A|A|919
7XAM|1|A|G|920
7XAM|1|A|C|921

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain M

50S ribosomal protein L15