IL_7XAM_028

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGU*AGAG

Length

7 nucleotides

Bulged bases

7XAM|1|A|G|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XAM_028 not in the Motif Atlas

Geometric match to IL_4V88_406

Geometric discrepancy: 0.2682

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

7XAM|1|A|U|959
7XAM|1|A|G|960
7XAM|1|A|U|961
*
7XAM|1|A|A|1048
7XAM|1|A|G|1049
7XAM|1|A|A|1050
7XAM|1|A|G|1051

Current chains

Chain A

23S rRNA

Nearby chains

Chain a

50S ribosomal protein L30