IL_7XAM_032

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCUACU*AAAC

Length

10 nucleotides

Bulged bases

7XAM|1|A|U|981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XAM_032 not in the Motif Atlas

Homologous match to IL_4WF9_033

Geometric discrepancy: 0.121

The information below is about IL_4WF9_033

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_16301.1

Basepair signature

cWW-cWS-tWH-R-L-R-cWW

Number of instances in this motif group

9

Unit IDs

7XAM|1|A|G|979
7XAM|1|A|C|980
7XAM|1|A|U|981
7XAM|1|A|A|982
7XAM|1|A|C|983
7XAM|1|A|U|984
*
7XAM|1|A|A|1024
7XAM|1|A|A|1025
7XAM|1|A|A|1026
7XAM|1|A|C|1027

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain N

50S ribosomal protein L16