IL_7XAM_047

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUG*CACC

Length

8 nucleotides

Bulged bases

7XAM|1|A|U|1179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XAM_047 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.253

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

7XAM|1|A|G|1177
7XAM|1|A|U|1178
7XAM|1|A|U|1179
7XAM|1|A|G|1180
*
7XAM|1|A|C|1194
7XAM|1|A|A|1195
7XAM|1|A|C|1196
7XAM|1|A|C|1197

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L11

Chain N

50S ribosomal protein L16

Chain W

50S ribosomal protein L25