IL_7XAM_050

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7XAM|1|A|U|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XAM_050 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1419

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

7XAM|1|A|C|1322
7XAM|1|A|G|1323
7XAM|1|A|G|1324
7XAM|1|A|U|1325
7XAM|1|A|G|1326
7XAM|1|A|A|1327
7XAM|1|A|A|1328
7XAM|1|A|G|1329
*
7XAM|1|A|U|1349
7XAM|1|A|G|1350
7XAM|1|A|G|1351
7XAM|1|A|A|1352
7XAM|1|A|G|1353

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L20