IL_7XAM_063

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAA*UAUGC

Length

9 nucleotides

Bulged bases

7XAM|1|A|U|1779

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XAM_063 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.2379

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7XAM|1|A|G|1653
7XAM|1|A|G|1654
7XAM|1|A|A|1655
7XAM|1|A|A|1656
*
7XAM|1|A|U|1777
7XAM|1|A|A|1778
7XAM|1|A|U|1779
7XAM|1|A|G|1780
7XAM|1|A|C|1781

Current chains

Chain A

23S rRNA

Nearby chains