IL_7XAM_074

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAUGG*UGAG

Length

9 nucleotides

Bulged bases

7XAM|1|A|U|1932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XAM_074 not in the Motif Atlas

Geometric match to IL_5J7L_296

Geometric discrepancy: 0.2456

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7XAM|1|A|C|1930
7XAM|1|A|A|1931
7XAM|1|A|U|1932
7XAM|1|A|G|1933
7XAM|1|A|G|1934
*
7XAM|1|A|U|1960
7XAM|1|A|G|1961
7XAM|1|A|A|1962
7XAM|1|A|G|1963

Current chains

Chain A

23S rRNA

Nearby chains