IL_7XAM_108

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XAM_108 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.0982

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7XAM|1|A|C|2876
7XAM|1|A|U|2877
7XAM|1|A|A|2878
7XAM|1|A|G|2879
7XAM|1|A|U|2880
7XAM|1|A|A|2881
7XAM|1|A|C|2882
*
7XAM|1|A|G|2887
7XAM|1|A|G|2888
7XAM|1|A|A|2889
7XAM|1|A|C|2890
7XAM|1|A|C|2891
7XAM|1|A|G|2892

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L6