IL_7XAM_129

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAGA*UCGUUGUUGAAAUAC

Length

20 nucleotides

Bulged bases

7XAM|1|A|A|2349, 7XAM|1|A|U|2386, 7XAM|1|A|U|2387, 7XAM|1|A|U|2395

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XAM_129 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.1884

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

7XAM|1|A|G|2347
7XAM|1|A|G|2348
7XAM|1|A|A|2349
7XAM|1|A|G|2350
7XAM|1|A|A|2351
*
7XAM|1|A|U|2383
7XAM|1|A|C|2384
7XAM|1|A|G|2385
7XAM|1|A|U|2386
7XAM|1|A|U|2387
7XAM|1|A|G|2388
7XAM|1|A|U|2389
7XAM|1|A|U|2390
7XAM|1|A|G|2391
7XAM|1|A|A|2392
7XAM|1|A|A|2393
7XAM|1|A|A|2394
7XAM|1|A|U|2395
7XAM|1|A|A|2396
7XAM|1|A|C|2397

Current chains

Chain A

23S rRNA

Nearby chains