IL_7XNX_026

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

7XNX|1|L1|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNX|1|L1|A|466
7XNX|1|L1|U|467
7XNX|1|L1|U|468
7XNX|1|L1|C|469
7XNX|1|L1|A|470
7XNX|1|L1|A|471
7XNX|1|L1|C|472
*
7XNX|1|L1|G|682
7XNX|1|L1|C|683
7XNX|1|L1|G|684
7XNX|1|L1|C|685
7XNX|1|L1|A|686
7XNX|1|L1|U|687
7XNX|1|L1|U|688
7XNX|1|L1|U|689

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain Lr

60S ribosomal protein L28