IL_7XNX_087
3D structure
- PDB id
- 7XNX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 7XNX|1|L1|C|1935, 7XNX|1|L1|A|2041
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7XNX_087 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1638
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7XNX|1|L1|G|1933
7XNX|1|L1|A|1934
7XNX|1|L1|C|1935
7XNX|1|L1|C|1936
7XNX|1|L1|C|1937
7XNX|1|L1|C|1938
7XNX|1|L1|A|1939
7XNX|1|L1|G|1940
7XNX|1|L1|A|1941
7XNX|1|L1|A|1942
7XNX|1|L1|A|1943
7XNX|1|L1|A|1944
*
7XNX|1|L1|U|2038
7XNX|1|L1|G|2039
7XNX|1|L1|A|2040
7XNX|1|L1|A|2041
7XNX|1|L1|A|2042
7XNX|1|L1|A|2043
7XNX|1|L1|U|2044
7XNX|1|L1|G|2045
7XNX|1|L1|G|2046
7XNX|1|L1|A|2047
7XNX|1|L1|U|2048
7XNX|1|L1|G|2049
7XNX|1|L1|G|2050
7XNX|1|L1|C|2051
7XNX|1|L1|G|2052
7XNX|1|L1|C|2053
Current chains
- Chain L1
- 28S rRNA
Nearby chains
- Chain L2
- 5S ribosomal RNA; 5S rRNA
- Chain LB
- 60S ribosomal protein L3
- Chain LI
- Ribosomal protein L10 isoform A
- Chain LO
- 60S ribosomal protein L13a
- Chain Lf
- 60S ribosomal protein L35a
- Chain Lm
- Ubiquitin-60S ribosomal protein L40
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