IL_7XNX_114
3D structure
- PDB id
- 7XNX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 7XNX|1|L1|G|3839
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7XNX_114 not in the Motif Atlas
- Geometric match to IL_4V9F_062
- Geometric discrepancy: 0.0935
- The information below is about IL_4V9F_062
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_28217.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 10
Unit IDs
7XNX|1|L1|A|2850
7XNX|1|L1|G|2851
7XNX|1|L1|U|2852
7XNX|1|L1|C|2853
7XNX|1|L1|G|2854
7XNX|1|L1|G|2855
*
7XNX|1|L1|C|3837
7XNX|1|L1|U|3838
7XNX|1|L1|G|3839
7XNX|1|L1|U|3840
Current chains
- Chain L1
- 28S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LV
- 60S ribosomal protein L23
Coloring options: