IL_7XNX_115

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

7XNX|1|L1|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNX_115 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0705

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7XNX|1|L1|C|2867
7XNX|1|L1|G|2868
7XNX|1|L1|U|2869
7XNX|1|L1|A|2870
7XNX|1|L1|A|2871
7XNX|1|L1|C|2872
*
7XNX|1|L1|G|2877
7XNX|1|L1|G|2878
7XNX|1|L1|A|2879
7XNX|1|L1|U|2880
7XNX|1|L1|A|2881
7XNX|1|L1|A|2882
7XNX|1|L1|G|2883

Current chains

Chain L1

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA