IL_7XNX_131

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)U*A(OMC)GCG

Length

18 nucleotides

Bulged bases

7XNX|1|L1|C|3791, 7XNX|1|L1|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNX_131 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.5104

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7XNX|1|L1|C|3781
7XNX|1|L1|5MC|3782
7XNX|1|L1|A|3783
7XNX|1|L1|A|3784
7XNX|1|L1|A2M|3785
7XNX|1|L1|U|3786
7XNX|1|L1|G|3787
7XNX|1|L1|C|3788
7XNX|1|L1|C|3789
7XNX|1|L1|U|3790
7XNX|1|L1|C|3791
7XNX|1|L1|OMG|3792
7XNX|1|L1|U|3793
*
7XNX|1|L1|A|3807
7XNX|1|L1|OMC|3808
7XNX|1|L1|G|3809
7XNX|1|L1|C|3810
7XNX|1|L1|G|3811

Current chains

Chain L1

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA