IL_7XNX_148

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

7XNX|1|L1|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNX_148 not in the Motif Atlas

Homologous match to IL_5TBW_105

Geometric discrepancy: 0.0844

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7XNX|1|L1|G|4405
7XNX|1|L1|U|4406
7XNX|1|L1|G|4407
*
7XNX|1|L1|U|4435
7XNX|1|L1|U|4436
7XNX|1|L1|U|4437
7XNX|1|L1|U|4438
7XNX|1|L1|U|4439

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LI

Ribosomal protein L10 isoform A