IL_7XNX_169

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAGC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNX_169 not in the Motif Atlas

Geometric match to IL_4V88_438

Geometric discrepancy: 0.2197

The information below is about IL_4V88_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7XNX|1|L1|G|4743
7XNX|1|L1|A|4744
7XNX|1|L1|G|4745
7XNX|1|L1|C|4746
*
7XNX|1|L1|G|4954
7XNX|1|L1|A|4955
7XNX|1|L1|A|4956
7XNX|1|L1|C|4957

Current chains

Chain L1

28S rRNA

Nearby chains

Chain L3

5.8S ribosomal RNA; 5.8S rRNA