IL_7XNX_187
3D structure
- PDB id
- 7XNX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7XNX_187 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.2917
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
7XNX|1|L2|G|71
7XNX|1|L2|U|72
7XNX|1|L2|U|73
7XNX|1|L2|A|74
7XNX|1|L2|G|75
7XNX|1|L2|U|76
7XNX|1|L2|A|77
7XNX|1|L2|C|78
*
7XNX|1|L2|G|98
7XNX|1|L2|G|99
7XNX|1|L2|A|100
7XNX|1|L2|A|101
7XNX|1|L2|U|102
7XNX|1|L2|A|103
7XNX|1|L2|C|104
Current chains
- Chain L2
- 5S rRNA
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LD
- 60S ribosomal protein L5
- Chain LF
- 60S ribosomal protein L7
- Chain LI
- Ribosomal protein L10 isoform A
- Chain LS
- 60S ribosomal protein L18a
Coloring options: