IL_7XNX_283
3D structure
- PDB id
- 7XNX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUG*UA
- Length
- 5 nucleotides
- Bulged bases
- 7XNX|1|S2|U|1721
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7XNX_283 not in the Motif Atlas
- Geometric match to IL_4V88_469
- Geometric discrepancy: 0.1683
- The information below is about IL_4V88_469
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
7XNX|1|S2|U|1720
7XNX|1|S2|U|1721
7XNX|1|S2|G|1722
*
7XNX|1|S2|U|1812
7XNX|1|S2|A|1813
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LV
- 60S ribosomal protein L23
- Chain Ln
- 60S ribosomal protein L41
- Chain SX
- 40S ribosomal protein S23
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