IL_7XNX_286
3D structure
- PDB id
- 7XNX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGAG*CGAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7XNX_286 not in the Motif Atlas
- Homologous match to IL_4V88_471
- Geometric discrepancy: 0.0953
- The information below is about IL_4V88_471
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
7XNX|1|S2|U|1733
7XNX|1|S2|G|1734
7XNX|1|S2|A|1735
7XNX|1|S2|G|1736
*
7XNX|1|S2|C|1798
7XNX|1|S2|G|1799
7XNX|1|S2|A|1800
7XNX|1|S2|A|1801
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
Coloring options: