IL_7XNX_298

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNX_298 not in the Motif Atlas

Homologous match to IL_8P9A_289

Geometric discrepancy: 0.0774

The information below is about IL_8P9A_289

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

7XNX|1|L1|G|2358
7XNX|1|L1|U|2359
7XNX|1|L1|A|2360
7XNX|1|L1|G|2361
7XNX|1|L1|U|2362
7XNX|1|L1|A2M|2363
7XNX|1|L1|OMG|2364
*
7XNX|1|L1|C|3858
7XNX|1|L1|G|3859
7XNX|1|L1|A|3860
7XNX|1|L1|A|3861
7XNX|1|L1|A|3862
7XNX|1|L1|C|3863

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17