IL_7XNX_301

3D structure

PDB id

7XNX (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

(PSU)CA(A2M)AGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNX_301 not in the Motif Atlas

Homologous match to IL_8P9A_316

Geometric discrepancy: 0.2336

The information below is about IL_8P9A_316

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.1

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7XNX|1|L1|PSU|3715
7XNX|1|L1|C|3716
7XNX|1|L1|A|3717
7XNX|1|L1|A2M|3718
7XNX|1|L1|A|3719
7XNX|1|L1|G|3720
7XNX|1|L1|U|3721
*
7XNX|1|L1|A|3732
7XNX|1|L1|A|3733
7XNX|1|L1|U|3734
7XNX|1|L1|G|3735
7XNX|1|L1|A|3736
7XNX|1|L1|A|3737
7XNX|1|L1|G|3738

Current chains

Chain L1

28S rRNA

Nearby chains

Chain CC

Transfer RNA; tRNA

Chain LA

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36