IL_7XNX_314
3D structure
- PDB id
- 7XNX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GGAUAAC*GCUAA(OMU)A(OMC)
- Length
- 15 nucleotides
- Bulged bases
- 7XNX|1|S2|OMU|172
- QA status
- Modified nucleotides: OMU, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7XNX_314 not in the Motif Atlas
- Homologous match to IL_8C3A_402
- Geometric discrepancy: 0.0837
- The information below is about IL_8C3A_402
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.4
- Basepair signature
- cWW-L-R-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
7XNX|1|S2|G|145
7XNX|1|S2|G|146
7XNX|1|S2|A|147
7XNX|1|S2|U|148
7XNX|1|S2|A|149
7XNX|1|S2|A|150
7XNX|1|S2|C|151
*
7XNX|1|S2|G|167
7XNX|1|S2|C|168
7XNX|1|S2|U|169
7XNX|1|S2|A|170
7XNX|1|S2|A|171
7XNX|1|S2|OMU|172
7XNX|1|S2|A|173
7XNX|1|S2|OMC|174
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain LW
- 60S ribosomal protein L24
- Chain SG
- 40S ribosomal protein S6
- Chain SY
- 40S ribosomal protein S24
Coloring options: