IL_7XNY_012

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GCUCGUGG*CGGC

Length

12 nucleotides

Bulged bases

7XNY|1|L1|C|183, 7XNY|1|L1|C|185, 7XNY|1|L1|G|188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNY|1|L1|G|182
7XNY|1|L1|C|183
7XNY|1|L1|U|184
7XNY|1|L1|C|185
7XNY|1|L1|G|186
7XNY|1|L1|U|187
7XNY|1|L1|G|188
7XNY|1|L1|G|189
*
7XNY|1|L1|C|252
7XNY|1|L1|G|253
7XNY|1|L1|G|254
7XNY|1|L1|C|255

Current chains

Chain L1

28S rRNA

Nearby chains

Chain L3

5.8S ribosomal RNA; 5.8S rRNA

Chain LL

60S ribosomal protein L13

Chain Lj

60S ribosomal protein L37