IL_7XNY_017
3D structure
- PDB id
- 7XNY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 7XNY|1|L1|G|409, 7XNY|1|L1|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7XNY_017 not in the Motif Atlas
- Homologous match to IL_8C3A_015
- Geometric discrepancy: 0.142
- The information below is about IL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
7XNY|1|L1|G|387
7XNY|1|L1|A|388
7XNY|1|L1|A|389
7XNY|1|L1|C|390
*
7XNY|1|L1|G|401
7XNY|1|L1|A|402
7XNY|1|L1|G|403
7XNY|1|L1|U|404
7XNY|1|L1|U|405
7XNY|1|L1|C|406
7XNY|1|L1|A|407
7XNY|1|L1|A|408
7XNY|1|L1|G|409
7XNY|1|L1|A|410
7XNY|1|L1|G|411
7XNY|1|L1|G|412
7XNY|1|L1|G|413
7XNY|1|L1|C|414
Current chains
- Chain L1
- 28S rRNA
Nearby chains
- Chain L3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LP
- 60S ribosomal protein L17
- Chain LY
- 60S ribosomal protein L26
- Chain Ll
- 60S ribosomal protein L39
Coloring options: