3D structure

PDB id
7XNY (explore in PDB, NAKB, or RNA 3D Hub)
Description
High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
GGUC*GCUAC
Length
9 nucleotides
Bulged bases
7XNY|1|L1|C|1301
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7XNY_020 not in the Motif Atlas
Geometric match to IL_4PHY_003
Geometric discrepancy: 0.3986
The information below is about IL_4PHY_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_99358.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
8

Unit IDs

7XNY|1|L1|G|443
7XNY|1|L1|G|444
7XNY|1|L1|U|445
7XNY|1|L1|C|446
*
7XNY|1|L1|G|1300
7XNY|1|L1|C|1301
7XNY|1|L1|U|1302
7XNY|1|L1|A|1303
7XNY|1|L1|C|1304

Current chains

Chain L1
28S rRNA

Nearby chains

Chain L3
5.8S ribosomal RNA; 5.8S rRNA
Chain Le
60S ribosomal protein L32
Chain Lf
60S ribosomal protein L35a

Coloring options:


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