IL_7XNY_020

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGUC*GCUAC

Length

9 nucleotides

Bulged bases

7XNY|1|L1|C|1301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_020 not in the Motif Atlas

Geometric match to IL_4PHY_003

Geometric discrepancy: 0.3986

The information below is about IL_4PHY_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49140.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

7XNY|1|L1|G|443
7XNY|1|L1|G|444
7XNY|1|L1|U|445
7XNY|1|L1|C|446
*
7XNY|1|L1|G|1300
7XNY|1|L1|C|1301
7XNY|1|L1|U|1302
7XNY|1|L1|A|1303
7XNY|1|L1|C|1304

Current chains

Chain L1

28S rRNA

Nearby chains

Chain L3

5.8S ribosomal RNA; 5.8S rRNA

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a