IL_7XNY_030

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

7XNY|1|L1|C|501, 7XNY|1|L1|C|502, 7XNY|1|L1|C|503, 7XNY|1|L1|G|504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_030 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.2162

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

7XNY|1|L1|G|500
7XNY|1|L1|C|501
7XNY|1|L1|C|502
7XNY|1|L1|C|503
7XNY|1|L1|G|504
7XNY|1|L1|G|505
*
7XNY|1|L1|U|653
7XNY|1|L1|C|654

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18

Chain La

60S ribosomal protein L27a