IL_7XNY_030
3D structure
- PDB id
- 7XNY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GCCCGG*UC
- Length
- 8 nucleotides
- Bulged bases
- 7XNY|1|L1|C|501, 7XNY|1|L1|C|502, 7XNY|1|L1|C|503, 7XNY|1|L1|G|504
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7XNY_030 not in the Motif Atlas
- Geometric match to IL_1R3E_001
- Geometric discrepancy: 0.2162
- The information below is about IL_1R3E_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_44609.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 28
Unit IDs
7XNY|1|L1|G|500
7XNY|1|L1|C|501
7XNY|1|L1|C|502
7XNY|1|L1|C|503
7XNY|1|L1|G|504
7XNY|1|L1|G|505
*
7XNY|1|L1|U|653
7XNY|1|L1|C|654
Current chains
- Chain L1
- 28S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LQ
- 60S ribosomal protein L18
- Chain La
- 60S ribosomal protein L27a
Coloring options: