IL_7XNY_038

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GG*CCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_038 not in the Motif Atlas

Geometric match to IL_8VTW_080

Geometric discrepancy: 0.3411

The information below is about IL_8VTW_080

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

7XNY|1|L1|G|739
7XNY|1|L1|G|740
*
7XNY|1|L1|C|923
7XNY|1|L1|C|924
7XNY|1|L1|C|925

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14