3D structure

PDB id
7XNY (explore in PDB, NAKB, or RNA 3D Hub)
Description
High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
CC(OMG)A(A2M)AG*CUAGUAGCUG
Length
17 nucleotides
Bulged bases
7XNY|1|L1|A|1650, 7XNY|1|L1|G|1654
QA status
Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7XNY|1|L1|C|1520
7XNY|1|L1|C|1521
7XNY|1|L1|OMG|1522
7XNY|1|L1|A|1523
7XNY|1|L1|A2M|1524
7XNY|1|L1|A|1525
7XNY|1|L1|G|1526
*
7XNY|1|L1|C|1648
7XNY|1|L1|U|1649
7XNY|1|L1|A|1650
7XNY|1|L1|G|1651
7XNY|1|L1|U|1652
7XNY|1|L1|A|1653
7XNY|1|L1|G|1654
7XNY|1|L1|C|1655
7XNY|1|L1|U|1656
7XNY|1|L1|G|1657

Current chains

Chain L1
28S rRNA

Nearby chains

Chain LC
60S ribosomal protein L4
Chain LL
60S ribosomal protein L13
Chain LN
60S ribosomal protein L15
Chain La
60S ribosomal protein L27a
Chain Lj
60S ribosomal protein L37

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.5423 s