IL_7XNY_068

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUCGCAGACCCGACGCCCGCCACG*CG

Length

26 nucleotides

Bulged bases

7XNY|1|L1|A|1701, 7XNY|1|L1|C|1702, 7XNY|1|L1|C|1703, 7XNY|1|L1|C|1707, 7XNY|1|L1|G|1708, 7XNY|1|L1|C|1709

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNY|1|L1|C|1694
7XNY|1|L1|U|1695
7XNY|1|L1|C|1696
7XNY|1|L1|G|1697
7XNY|1|L1|C|1698
7XNY|1|L1|A|1699
7XNY|1|L1|G|1700
7XNY|1|L1|A|1701
7XNY|1|L1|C|1702
7XNY|1|L1|C|1703
7XNY|1|L1|C|1704
7XNY|1|L1|G|1705
7XNY|1|L1|A|1706
7XNY|1|L1|C|1707
7XNY|1|L1|G|1708
7XNY|1|L1|C|1709
7XNY|1|L1|C|1714
7XNY|1|L1|C|1715
7XNY|1|L1|G|1716
7XNY|1|L1|C|1717
7XNY|1|L1|C|1718
7XNY|1|L1|A|1719
7XNY|1|L1|C|1720
7XNY|1|L1|G|1721
*
7XNY|1|L1|C|1841
7XNY|1|L1|G|1842

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29