IL_7XNY_075

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUCU*AAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_075 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.1879

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

7XNY|1|L1|G|1753
7XNY|1|L1|U|1754
7XNY|1|L1|C|1755
7XNY|1|L1|U|1756
*
7XNY|1|L1|A|1775
7XNY|1|L1|A|1776
7XNY|1|L1|C|1777

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LI

Ribosomal protein L10 isoform A