3D structure

PDB id
7XNY (explore in PDB, NAKB, or RNA 3D Hub)
Description
High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
UUUG*C(A2M)GA
Length
8 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7XNY_079 not in the Motif Atlas
Geometric match to IL_1MFQ_004
Geometric discrepancy: 0.3026
The information below is about IL_1MFQ_004
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_15225.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

7XNY|1|L1|U|1861
7XNY|1|L1|U|1862
7XNY|1|L1|U|1863
7XNY|1|L1|G|1864
*
7XNY|1|L1|C|1870
7XNY|1|L1|A2M|1871
7XNY|1|L1|G|1872
7XNY|1|L1|A|1873

Current chains

Chain L1
28S rRNA

Nearby chains

Chain L2
5S ribosomal RNA; 5S rRNA
Chain LI
Ribosomal protein L10 isoform A
Chain Lb
60S ribosomal protein L29

Coloring options:


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