IL_7XNY_079

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UUUG*C(A2M)GA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_079 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.3026

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7XNY|1|L1|U|1861
7XNY|1|L1|U|1862
7XNY|1|L1|U|1863
7XNY|1|L1|G|1864
*
7XNY|1|L1|C|1870
7XNY|1|L1|A2M|1871
7XNY|1|L1|G|1872
7XNY|1|L1|A|1873

Current chains

Chain L1

28S rRNA

Nearby chains

Chain L2

5S ribosomal RNA; 5S rRNA

Chain LI

Ribosomal protein L10 isoform A

Chain Lb

60S ribosomal protein L29