IL_7XNY_089

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

7XNY|1|L1|A|2002

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_089 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.2269

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7XNY|1|L1|G|2001
7XNY|1|L1|A|2002
7XNY|1|L1|G|2003
7XNY|1|L1|U|2004
7XNY|1|L1|G|2005
*
7XNY|1|L1|C|2014
7XNY|1|L1|U|2015
7XNY|1|L1|C|2016

Current chains

Chain L1

28S rRNA

Nearby chains