IL_7XNY_106

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

7XNY|1|L1|U|2687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_106 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.0862

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

7XNY|1|L1|C|2646
7XNY|1|L1|A|2647
7XNY|1|L1|G|2648
*
7XNY|1|L1|C|2685
7XNY|1|L1|G|2686
7XNY|1|L1|U|2687
7XNY|1|L1|G|2688

Current chains

Chain L1

28S rRNA

Nearby chains

Chain Lg

60S ribosomal protein L34