IL_7XNY_126

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

7XNY|1|L1|A|3712

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_126 not in the Motif Atlas

Homologous match to IL_8C3A_092

Geometric discrepancy: 0.4058

The information below is about IL_8C3A_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58579.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

7XNY|1|L1|G|3710
7XNY|1|L1|A|3711
7XNY|1|L1|A|3712
7XNY|1|L1|U|3713
7XNY|1|L1|G|3714
*
7XNY|1|L1|C|3739
7XNY|1|L1|G|3740
7XNY|1|L1|C|3741

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain S2

Small subunit ribosomal RNA; SSU rRNA