IL_7XNY_136

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

7XNY|1|L1|G|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_136 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.0916

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

7XNY|1|L1|U|3927
7XNY|1|L1|A|3928
7XNY|1|L1|G|3929
*
7XNY|1|L1|U|4181
7XNY|1|L1|G|4182
7XNY|1|L1|G|4183
7XNY|1|L1|G|4184

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15

Chain Lo

60S ribosomal protein L36a