IL_7XNY_145

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGC(PSU)UG*UGA(PSU)CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNY|1|L1|G|4400
7XNY|1|L1|G|4401
7XNY|1|L1|C|4402
7XNY|1|L1|PSU|4403
7XNY|1|L1|U|4404
7XNY|1|L1|G|4405
*
7XNY|1|L1|U|4439
7XNY|1|L1|G|4440
7XNY|1|L1|A|4441
7XNY|1|L1|PSU|4442
7XNY|1|L1|C|4443
7XNY|1|L1|C|4444

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LI

Ribosomal protein L10 isoform A

Chain Lb

60S ribosomal protein L29