IL_7XNY_150

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

7XNY|1|L1|A|4518, 7XNY|1|L1|C|4519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_150 not in the Motif Atlas

Homologous match to IL_8C3A_117

Geometric discrepancy: 0.0548

The information below is about IL_8C3A_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

7XNY|1|L1|C|4458
7XNY|1|L1|U|4459
*
7XNY|1|L1|A|4517
7XNY|1|L1|A|4518
7XNY|1|L1|C|4519
7XNY|1|L1|G|4520

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a

Chain LV

60S ribosomal protein L23