IL_7XNY_155

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

A(OMC)C*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_155 not in the Motif Atlas

Homologous match to IL_8C3A_121

Geometric discrepancy: 0.2921

The information below is about IL_8C3A_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

7XNY|1|L1|A|4535
7XNY|1|L1|OMC|4536
7XNY|1|L1|C|4537
*
7XNY|1|L1|G|4549
7XNY|1|L1|G|4550
7XNY|1|L1|U|4551

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8