IL_7XNY_164

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

UU*AAUG

Length

6 nucleotides

Bulged bases

7XNY|1|L1|A|4656, 7XNY|1|L1|U|4657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7XNY_164 not in the Motif Atlas

Homologous match to IL_5TBW_119

Geometric discrepancy: 0.2528

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

7XNY|1|L1|U|4641
7XNY|1|L1|U|4642
*
7XNY|1|L1|A|4655
7XNY|1|L1|A|4656
7XNY|1|L1|U|4657
7XNY|1|L1|G|4658

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31