IL_7XNY_169

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CCUCGGAUAG*UGCGGAGUG

Length

19 nucleotides

Bulged bases

7XNY|1|L1|C|4757, 7XNY|1|L1|U|4758, 7XNY|1|L1|A|4764, 7XNY|1|L1|G|4870, 7XNY|1|L1|C|4871, 7XNY|1|L1|G|4873, 7XNY|1|L1|U|4876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNY|1|L1|C|4756
7XNY|1|L1|C|4757
7XNY|1|L1|U|4758
7XNY|1|L1|C|4759
7XNY|1|L1|G|4760
7XNY|1|L1|G|4761
7XNY|1|L1|A|4762
7XNY|1|L1|U|4763
7XNY|1|L1|A|4764
7XNY|1|L1|G|4765
*
7XNY|1|L1|U|4869
7XNY|1|L1|G|4870
7XNY|1|L1|C|4871
7XNY|1|L1|G|4872
7XNY|1|L1|G|4873
7XNY|1|L1|A|4874
7XNY|1|L1|G|4875
7XNY|1|L1|U|4876
7XNY|1|L1|G|4877

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LH

60S ribosomal protein L9

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain LS

60S ribosomal protein L18a