IL_7XNY_172

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAAACG*CUCGC

Length

11 nucleotides

Bulged bases

7XNY|1|L1|C|4895

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNY|1|L1|G|4891
7XNY|1|L1|A|4892
7XNY|1|L1|A|4893
7XNY|1|L1|A|4894
7XNY|1|L1|C|4895
7XNY|1|L1|G|4896
*
7XNY|1|L1|C|4924
7XNY|1|L1|U|4925
7XNY|1|L1|C|4926
7XNY|1|L1|G|4927
7XNY|1|L1|C|4928

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a