IL_7XNY_263
3D structure
- PDB id
- 7XNY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GUU*A(A2M)C
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7XNY_263 not in the Motif Atlas
- Geometric match to IL_5C5W_002
- Geometric discrepancy: 0.1369
- The information below is about IL_5C5W_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
7XNY|1|S2|G|1345
7XNY|1|S2|U|1346
7XNY|1|S2|U|1347
*
7XNY|1|S2|A|1382
7XNY|1|S2|A2M|1383
7XNY|1|S2|C|1384
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SA
- 40S ribosomal protein SA
- Chain SC
- 40S ribosomal protein S2
- Chain SD
- 40S ribosomal protein S3
- Chain SR
- 40S ribosomal protein S17
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