3D structure

PDB id
7XNY (explore in PDB, NAKB, or RNA 3D Hub)
Description
High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
ACU*AUU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7XNY_270 not in the Motif Atlas
Geometric match to IL_3SZX_002
Geometric discrepancy: 0.0896
The information below is about IL_3SZX_002
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_01003.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
174

Unit IDs

7XNY|1|S2|A|1537
7XNY|1|S2|C|1538
7XNY|1|S2|U|1539
*
7XNY|1|S2|A|1594
7XNY|1|S2|U|1595
7XNY|1|S2|U|1596

Current chains

Chain S2
18S rRNA

Nearby chains

Chain SF
40S ribosomal protein S5
Chain SS
40S ribosomal protein S18
Chain ST
40S ribosomal protein S19
Chain SZ
40S ribosomal protein S25

Coloring options:


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