3D structure

PDB id
7XNY (explore in PDB, NAKB, or RNA 3D Hub)
Description
High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
Experimental method
ELECTRON MICROSCOPY
Resolution
2.5 Å

Loop

Sequence
G(OMC)CC*G(UR3)A(6MZ)C
Length
9 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: OMC, UR3, 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7XNY_275 not in the Motif Atlas
Homologous match to IL_8P9A_453
Geometric discrepancy: 0.065
The information below is about IL_8P9A_453
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_25873.1
Basepair signature
cWW-cSH-cWS-cWW-cWW
Number of instances in this motif group
6

Unit IDs

7XNY|1|S2|G|1702
7XNY|1|S2|OMC|1703
7XNY|1|S2|C|1704
7XNY|1|S2|C|1705
*
7XNY|1|S2|G|1829
7XNY|1|S2|UR3|1830
7XNY|1|S2|A|1831
7XNY|1|S2|6MZ|1832
7XNY|1|S2|C|1833

Current chains

Chain S2
18S rRNA

Nearby chains

Chain L1
Large subunit ribosomal RNA; LSU rRNA
Chain Ln
60S ribosomal protein L41

Coloring options:


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